Data

class pathomx.data.DataDefinition(target, definition, title=None, *args, **kwargs)

can_consume(data)

cmp_map = {u'>=': <built-in function ge>, u'=': <built-in function eq>, u'<=': <built-in function le>, u'aloeic': <function at_least_one_element_in_common at 0x7f5a73f79578>, u'!=': <built-in function ne>, u'<': <built-in function lt>, u'>': <built-in function gt>}

get_cmp_fn(s)

class pathomx.data.DataManager(parent, view, *args, **kwargs)

add_input(interface)

add_output(interface, dso=None, is_public=True)

can_consume(data, consumer_defs=None)

can_consume_which_of(datalist, consumer_defs=None)

consume(data)

consume_any_of(data_l)

consume_with(data, consumer_def)

consumed

get(interface)

geto(interface)

has_consumable(manager)

interfaces_changed

notify_watchers(interface)

provide(target)

put(interface, dso, update_consumers=True)

refresh_consumed_data()

remove_input(interface)

remove_output(interface)

reset()

source_updated

stop_consuming(target)

stop_providing(data)

unconsumed

unget(interface)

unput(interface)

class pathomx.data.DataSet(manager=None, size=(0, ), name=u'', description=u'', *args, **kwargs)

annotations_from_XML(et, obj)

annotations_to_XML(et, obj, anno)

as_class_groups(d=0, fn=<Mock object>, classes=None)

as_copy()

as_filtered(dim=1, scales=None, classes=None, labels=None, entities=None)

as_summary(fn=<Mock object>, dim=1, match_attribs=[u'classes', u'labels', u'entities'])

classes_l

classes_n

classes_t

crop(shape)

dimensions

empty(size=(0, ))

entities_l

entities_n

entities_t

from_XML()

import_data(dso)

is_empty

labels_l

labels_n

labels_t

refresh_interfaces()

Refresh all interfaces, e.g. as_table

register_interface(interface_name, interface)

remove_invalid_data(axis=1)

scales_n

scales_r

scales_t

shape

to_XML()

class pathomx.data.DataTreeItem(dso, header, parentItem)

a python object used to return row/column data, and keep note of it’s parents and/or children

appendChild(item)

child(row)

childCount()

columnCount()

data(column)

icon()

parent()

row()

class pathomx.data.DataTreeModel(dsos=[], parent=None)

a model to display a few names, ordered by sex

columnCount(parent=None)

data(index, role)

headerData(column, orientation, role)

index(row, column, parent)

parent(index)

refresh()

rowCount(parent=<class 'QModelIndex'>)

setupModelData()

class pathomx.data.TableInterface(dso, *args, **kwargs)

columnCount(parent)

data(index, role)

headerData(col, orientation, role)

refresh()

rowCount(parent)

sort(col, order)

sort table by given column number col

pathomx.data.at_least_one_element_in_common(l1, l2)