Index

A

add_input() (pathomx.data.DataManager method) add_output() (pathomx.data.DataManager method)

appendChild() (pathomx.data.DataTreeItem method) at_least_one_element_in_common() (in module pathomx.data)

B

BaseObj (class in pathomx.displayobjects)

C

can_consume() (pathomx.data.DataDefinition method) (pathomx.data.DataManager method) can_consume_which_of() (pathomx.data.DataManager method) category_bar() (in module pathomx.figures) check() (pathomx.data.DataDefinition method) (pathomx.data.ImageDataDefinition method) (pathomx.data.NumpyArrayDataDefinition method) (pathomx.data.PandasDataDefinition method) check_and_emit_progress() (pathomx.kernel_helpers.open_with_progress method) child() (pathomx.data.DataTreeItem method) childCount() (pathomx.data.DataTreeItem method)

cmp_map (pathomx.data.DataDefinition attribute) columnCount() (pathomx.data.DataTreeItem method) (pathomx.data.DataTreeModel method) consume() (pathomx.data.DataManager method) consume_any_app() (pathomx.data.DataManager method) consume_with() (pathomx.data.DataManager method) consumed (pathomx.data.DataManager attribute)

D

data() (pathomx.data.DataTreeItem method) (pathomx.data.DataTreeModel method) DataDefinition (class in pathomx.data) DataManager (class in pathomx.data)

DataTreeItem (class in pathomx.data) DataTreeModel (class in pathomx.data) difference() (in module pathomx.figures)

E

extend_limits() (in module pathomx.figures)

F

find_linear_scale() (in module pathomx.figures)

find_packager() (in module pathomx.utils)

G

get() (pathomx.data.DataManager method) get_cmp_fn() (pathomx.data.DataDefinition method) get_text_bbox_data_coords() (in module pathomx.figures)

get_text_bbox_screen_coords() (in module pathomx.figures) geto() (pathomx.data.DataManager method)

H

has_consumable() (pathomx.data.DataManager method) headerData() (pathomx.data.DataTreeModel method) heatmap() (in module pathomx.figures)

histogram() (in module pathomx.figures) Html (class in pathomx.displayobjects)

I

icon() (pathomx.data.DataTreeItem method) ImageDataDefinition (class in pathomx.data) index() (pathomx.data.DataTreeModel method)

interfaces_changed (pathomx.data.DataManager attribute) invert_direction() (in module pathomx.utils)

L

lumina() (in module pathomx.utils)

luminahex() (in module pathomx.utils)

M

Markdown (class in pathomx.displayobjects)

mkdir_p() (in module pathomx.utils)

N

next() (pathomx.utils.UnicodeReader method) nonull() (in module pathomx.utils)

notify_watchers() (pathomx.data.DataManager method) NumpyArrayDataDefinition (class in pathomx.data)

O

open_with_progress (class in pathomx.kernel_helpers)

output_updated (pathomx.data.DataManager attribute)

P

PandasDataDefinition (class in pathomx.data) parent() (pathomx.data.DataTreeItem method) (pathomx.data.DataTreeModel method) pathomx.custom_exceptions (module) pathomx.data (module) pathomx.displayobjects (module) pathomx.figures (module) pathomx.kernel_helpers (module) pathomx.translate (module) pathomx.utils (module) pathomx_notebook_start() (in module pathomx.kernel_helpers) pathomx_notebook_stop() (in module pathomx.kernel_helpers)

PathomxExternalResourceTimeoutException PathomxExternalResourceUnavailableException PathomxIncorrectFileFormatException PathomxIncorrectFileStructureException PathomxTool (class in pathomx.kernel_helpers) plot_cov_ellipse() (in module pathomx.figures) plot_point_cov() (in module pathomx.figures) progress() (in module pathomx.kernel_helpers) provide() (pathomx.data.DataManager method) put() (pathomx.data.DataManager method)

R

read() (pathomx.kernel_helpers.open_with_progress method) refresh() (pathomx.data.DataTreeModel method) refresh_consumed_data() (pathomx.data.DataManager method) remove_input() (pathomx.data.DataManager method)

remove_output() (pathomx.data.DataManager method) reset() (pathomx.data.DataManager method) row() (pathomx.data.DataTreeItem method) rowCount() (pathomx.data.DataTreeModel method)

S

scatterplot() (in module pathomx.figures) setupModelData() (pathomx.data.DataTreeModel method) sigstars() (in module pathomx.utils) source_updated (pathomx.data.DataManager attribute)

spectra() (in module pathomx.figures) stop_consuming() (pathomx.data.DataManager method) Svg (class in pathomx.displayobjects) swap() (in module pathomx.utils)

T

tr() (in module pathomx.translate)

U

unconsumed (pathomx.data.DataManager attribute) unget() (pathomx.data.DataManager method) UnicodeReader (class in pathomx.utils)

UnicodeWriter (class in pathomx.utils) unput() (pathomx.data.DataManager method)

W

which() (in module pathomx.utils) writerow() (pathomx.utils.UnicodeWriter method)

writerows() (pathomx.utils.UnicodeWriter method)